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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthethic_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthethic_map [ View Map Set Info ]
Map Name: 1
Map Start: 0 bp
Map Stop: 43.27 bp
Features by Type:
290 Marker
112 QTL
402 Total

Map Features

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Items 1 to 25 of 401.       of 17 | Next
Rice - Synthethic_map - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
B052E Marker 23.097 - 23.106 Maize - Physical_map_IBM2 - 3 B052E Marker 221.78 - 221.79 (bp) Automated name-based, Automated name-based View Maps
B005E Marker 1.187 - 1.189 Maize - Physical_map_IBM2 - 8 B005E Marker 10.29 (bp) Automated name-based, Automated name-based View Maps
RG472A Marker 1.039 No other positions
B070B Marker 33.601 - 33.605 Maize - Physical_map_IBM2 - 3 B070B Marker 189.59 - 189.6 (bp) Automated name-based, Automated name-based View Maps
B020E Marker 6.279 - 6.283 Maize - Physical_map_IBM2 - 8 B020E Marker 25.01 - 25.02 (bp) Automated name-based, Automated name-based View Maps
RM5385 Marker 17.31 No other positions
B038B Marker 14.293 - 14.303 Maize - Physical_map_IBM2 - 3 B038B Marker 66.11 - 66.12 (bp) Automated name-based, Automated name-based View Maps
B1065E10 Marker 38.287 No other positions
OsNAC8 Marker 8.793 - 8.797 No other positions
"OsAMT3;1" Marker 37.735 - 37.738 No other positions
B062E Marker 30.021 - 30.024 Maize - Physical_map_IBM2 - 3 B062E Marker 202.21 - 202.22 (bp) Automated name-based, Automated name-based View Maps
B014E Marker 4.216 - 4.218 Maize - Physical_map_IBM2 - 8 B014E Marker 19.13 (bp) Automated name-based, Automated name-based View Maps
C955 Marker 7.477 No other positions
B079B Marker 41.883 - 41.886 Maize - Physical_map_IBM2 - 8 B079B Marker 157.65 - 157.66 (bp) Automated name-based, Automated name-based View Maps
B031B Marker 10.022 - 10.027 Maize - Physical_map_IBM2 - 3 B031B Marker 47.45 - 47.47 (bp) Automated name-based, Automated name-based View Maps
RG132 Marker 31.227 No other positions
B047B Marker 21.119 - 21.124 Maize - Physical_map_IBM2 - 3 B047B Marker 226.27 (bp) Automated name-based, Automated name-based View Maps
RG77 Marker 42.253 No other positions
B055E Marker 24.492 - 24.497 Maize - Physical_map_IBM2 - 3 B055E Marker 225.85 (bp) Automated name-based, Automated name-based View Maps
B006E Marker 1.907 - 1.91 Maize - Physical_map_IBM2 - 3 B006E Marker 21.27 (bp) Automated name-based, Automated name-based View Maps
RM428 Marker 2.606 No other positions
B071E Marker 34.033 - 34.034 Maize - Physical_map_IBM2 - 8 B071E Marker 170.97 (bp) Automated name-based, Automated name-based View Maps
B023E Marker 7.197 - 7.204 Maize - Physical_map_IBM2 - 8 B023E Marker 28.85 - 28.86 (bp) Automated name-based, Automated name-based View Maps
BCD134 Marker 21.624 No other positions
B039E Marker 14.68 - 14.683 Maize - Physical_map_IBM2 - 8 B039E Marker 46.62 (bp) Automated name-based, Automated name-based View Maps